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When you use bidirectional fiber, make sure to connect input signals to its two input terminals. if there is only one input signal, you can connect
the second one to NULL. Another point you should take care of it is the delay. if the calculation of the back-directional is dependent on the forward one or vice-versa, also please make sure to add delay (optical or electrical depending on your design) to allow the program to wait for the calculation from one point to another.
Hope that clears up your concerns.